PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g004500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 396aa    MW: 41187 Da    PI: 7.9854
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g004500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702205.31.7e-631803482154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.....kskkqsalsstk 90 
                     +sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + + ++ +a +s  +++ +k++r       ++++q+a+s+t+
  Csa08g004500.1 180 ASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPSGPNPTAGSSLsTSSGTKKPRIVgsqqqQQQQQQATSHTS 274
                     57999*************************************************99999888887756777888887666543444555555555 PP

          DUF702  91 lssaeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +s++ +++++etss           +P +++++avf+cvrv++v+dg++e+aYq+ v+igGhv kG+LydqGle 
  Csa08g004500.1 275 TSNT-PPQSFETSSsrqdgggsreaWPGQIRAPAVFKCVRVTAVEDGDDEYAYQAIVKIGGHVCKGFLYDQGLEP 348
                     5544.66778887789********************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.0E-57183347IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.4E-26185227IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.2E-28298346IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
VATTRRHNLP TSDSGAFTDW AAATTTTSSL ATEDLSLGFN AGPAVVHGGL GSASAAADVP  60
SWHPGSSVRY GLQSSSAATD MGMVGLRDVF LVAPAYHHHQ NAGVISGPEA AALGVGVVPL  120
LTAGPPQQNV EDTDINFLGN NRRWQNNNNN HETQYLQFKS TNQTAVGTSS NNNSGSGSGA  180
SGTATCQDCG NQAKKECKQR RCRTCCKSRG FDCSTHVKST WVSAARRRER QVMPSGPNPT  240
AGSSLSTSSG TKKPRIVGSQ QQQQQQQQAT SHTSTSNTPP QSFETSSSRQ DGGGSREAWP  300
GQIRAPAVFK CVRVTAVEDG DDEYAYQAIV KIGGHVCKGF LYDQGLEPKE GFPNMSDLHL  360
GGAANNHNGV SASAPILEQP NVYGGGGGSG GGFYG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0206140.0BT020614.1 Arabidopsis thaliana At5g12330 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419822.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK91e-163LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLR0HF130.0R0HF13_9BRAS; Uncharacterized protein
STRINGAT5G12330.40.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.40.0Lateral root primordium (LRP) protein-related